publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. embryo-profiler.png
    EmbryoProfiler: A Visual Clinical Decision Support System for IVF
    Johannes Knittel , Simon Warchol , Jakob Troidl, and 7 more authors
    IEEE Transactions on Visualization and Computer Graphics, 2025
    PDF Website
  2. synanno.png
    SynAnno: Interactive Guided Proofreading of Synaptic Annotations
    Leander Lauenburg , Jakob Troidl, Adam Gohain , and 3 more authors
    IEEE Transactions on Visualization and Computer Graphics, 2025
    PDF Website
  3. momo.png
    MoMo-Combining Neuron Morphology and Connectivity for Interactive Motif Analysis in Connectomes
    Michael Fekadu Shewarega* , Jakob Troidl*, Oliver Alvarado Rodriguez , and 6 more authors
    IEEE Transactions on Visualization on Computer Graphics , 2025
    PDF Website
  4. fish.png
    A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain
    Mariela D Petkova , Michal Januszewski , Tim Blakely , and 13 more authors
    bioarxiv, 2025
    PDF Website
  5. gnsr.png
    Global Neuron Shape Reasoning with Point Affinity Transformers
    Jakob Troidl, Johannes Knittel , Wanhua Li , and 3 more authors
    bioarxiv, 2025
    PDF Slides Website
  6. niiv.png
    niiv: Interactive Self-supervised Neural Implicit Isotropic Volume Reconstruction
    Jakob Troidl, Yiqing Liang , Johanna Beyer , and 5 more authors
    MICCAI Workshop on Efficient Medical AI, 2025
    PDF Website
  7. CAVE.png
    CAVE: Connectome Annotation Versioning Engine
    Sven Dorkenwald , Casey M Schneider-Mizell , Derrick Brittain , and 8 more authors
    Nature Methods, 2025
    PDF
  8. hackathon.png
    Addressing persistent challenges in digital image analysis of cancer tissue: resources developed from a hackathon
    Sandhya Prabhakaran , Clarence Yapp , Gregory J. Baker , and 15 more authors
    Molecular Oncology, 2025
    PDF

2024

  1. h01.jpeg
    A petavoxel fragment of human cerebral cortex reconstructed at nanoscale resolution
    Alexander Shapson-Coe , Michał Januszewski , Daniel R. Berger , and 28 more authors
    Science, 2024
    Video Website
  2. psudo.png
    psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring
    Simon Warchol , Jakob Troidl, Jeremy Muhlich , and 7 more authors
    Computer Graphics Forum (Proceedings Eurographics/IEEE Symposium on Visualization, Eurovis 2024, 2024
    PDF Website

2023

  1. cs171-gpt.png
    Beyond Generating Code: Evaluating GPT on a Data Visualization Course
    Zhutian Chen , Chenyang Zhang , Qianwen Wang , and 5 more authors
    IEEE VIS Workshop on Visualization Education, Literacy, and Activities, 2023
    PDF
  2. vimo-teaser-02.png
    Vimo: Visual Analysis of Neuronal Connectivity Motifs
    Jakob Troidl, Simon Warchol , Jinhan Choi , and 8 more authors
    IEEE Transactions on Visualization and Computer Graphics (IEEE VIS), 2023
    PDF Supp Slides Website
  3. lioness.png
    Dense 4D nanoscale reconstruction of living brain tissue
    Philipp Velicky , Eder Miguel , Julia M Michalska , and 8 more authors
    Nature Methods, 2023
    Website
  4. rapid-prototyping.png
    Rapid Prototyping for Coordinated Views of Multi-scale Spatial and Abstract Data: A Grammar-based Approach
    Philipp Harth , Arco Bast , Jakob Troidl, and 6 more authors
    Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), 2023
    PDF Slides Website

2022

  1. barrio-teaser.jpeg
    Barrio: Customizable Spatial Neighborhood Analysis and Comparison for Nanoscale Brain Structures
    Jakob Troidl, Corrado Cali , Eduard Gröller , and 3 more authors
    Computer Graphics Forum (Proceedings Eurographics/IEEE Symposium on Visualization, EuroVis, 2022
    PDF Supp Slides Website
  2. connectomics_star.png
    A Survey of Visualization and Analysis in High-Resolution Connectomics
    Johanna Beyer* , Jakob Troidl*, Saeed Boorboor , and 3 more authors
    In Computer Graphics Forum , 2022
    PDF Supp Slides Website

2020

  1. killingsurfaces.jpeg
    Objective Observer-Relative Flow Visualization in Curved Spaces for Unsteady 2D Geophysical Flows
    Peter Rautek , Matej Mlejnek , Johanna Beyer , and 4 more authors
    IEEE Transactions on Visualization and Computer Graphics, 2020
    PDF Supp Website